https://bayesicresearch.org/software/ Recent content in Software on Bayesic Research Hugo en-us info@bayesicresearch.org (Anthony Greenberg) info@bayesicresearch.org (Anthony Greenberg) CC BY-SA 4.0 Fri, 05 Jun 2026 00:00:00 +0000 https://bayesicresearch.org/software/plasmoid-show-stdout/ Fri, 05 Jun 2026 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/plasmoid-show-stdout/ Displays output of user-defined shell scripts to the Plasma Task Manager https://bayesicresearch.org/software/fastx-tools/ Tue, 03 Mar 2026 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/fastx-tools/ Command line tools for simple operations on FASTA and FASTQ files https://bayesicresearch.org/software/isoseqqc/ Tue, 03 Mar 2026 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/isoseqqc/ Identifying and fixing poorly aligned isoSeq read segments https://bayesicresearch.org/software/analyzealignments/ Wed, 05 Jul 2023 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/analyzealignments/ Estimating sequence diversity from sequence alignments https://bayesicresearch.org/software/vash/ Tue, 11 Apr 2023 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/vash/ Fast locus similarity (LD) estimates using hashing https://bayesicresearch.org/software/bayesicsamplers/ Mon, 15 Feb 2021 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/bayesicsamplers/ Markov chain Monte Carlo samplers https://bayesicresearch.org/software/bayesicmatrix/ Wed, 10 Feb 2021 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/bayesicmatrix/ A collection of matrix operations https://bayesicresearch.org/software/bayesicutilities/ Fri, 05 Feb 2021 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/bayesicutilities/ Collection of numerical utilities https://bayesicresearch.org/software/align2bed/ Wed, 13 Jan 2021 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/align2bed/ Extract SNPs from alignments https://bayesicresearch.org/software/bayes-lidical/ Wed, 13 Jan 2021 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/bayes-lidical/ Bayesian analyses of limited dilution assays https://bayesicresearch.org/software/gwa-like-methods/ Wed, 13 Jan 2021 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/gwa-like-methods/ Likelihood methods for genome-wide associations https://bayesicresearch.org/software/mugen/ Wed, 13 Jan 2021 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/mugen/ Multitrait genetic hierarchical models https://bayesicresearch.org/software/poly-div-extract/ Tue, 12 Jan 2021 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/poly-div-extract/ Extract polymorphic and divergent sites from alignments and VCF files https://bayesicresearch.org/software/mugamix/ Tue, 12 Jan 2021 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/mugamix/ Multivariate Gaussian mixture models https://bayesicresearch.org/software/sample-snps/ Tue, 12 Jan 2021 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/sample-snps/ Uniform online sampling of SNP records from files https://bayesicresearch.org/software/dwmbar/ Tue, 12 Jan 2021 00:00:00 +0000info@bayesicresearch.org (Anthony Greenberg) https://bayesicresearch.org/software/dwmbar/ Status bar for the dynamic window manager