analyzeAlignments
Estimating sequence diversity from sequence alignments
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BayesicSpace::ParseFASTA Member List

This is the complete list of members for BayesicSpace::ParseFASTA, including all inherited members.

alignmentLength() constBayesicSpace::ParseFASTAinline
diversityInWindows(const size_t &windowSize, const size_t &stepSize) constBayesicSpace::ParseFASTA
extractConsensusWindow(const size_t &startIdx, const size_t &windowLength) constBayesicSpace::ParseFASTA
extractSequence(const std::string &querySequence) constBayesicSpace::ParseFASTA
extractWindow(const size_t &windowStartPosition, const size_t &windowSize) constBayesicSpace::ParseFASTA
extractWindowSorted(const size_t &windowStartPosition, const size_t &windowSize) constBayesicSpace::ParseFASTA
imputeMissing()BayesicSpace::ParseFASTA
operator=(const ParseFASTA &toCopy)BayesicSpace::ParseFASTA
operator=(ParseFASTA &&toMove) noexceptBayesicSpace::ParseFASTA
ParseFASTA()=defaultBayesicSpace::ParseFASTA
ParseFASTA(const std::string &fastaFileName)BayesicSpace::ParseFASTA
ParseFASTA(const ParseFASTA &toCopy)BayesicSpace::ParseFASTA
ParseFASTA(ParseFASTA &&toMove) noexceptBayesicSpace::ParseFASTA
sequenceNumber() const noexceptBayesicSpace::ParseFASTAinline
~ParseFASTA()=defaultBayesicSpace::ParseFASTA