analyzeAlignments
Estimating sequence diversity from sequence alignments
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BayesicSpace::ParseFASTA Member List
This is the complete list of members for
BayesicSpace::ParseFASTA
, including all inherited members.
alignmentLength
() const
BayesicSpace::ParseFASTA
inline
diversityInWindows
(const size_t &windowSize, const size_t &stepSize) const
BayesicSpace::ParseFASTA
extractConsensusWindow
(const size_t &startIdx, const size_t &windowLength) const
BayesicSpace::ParseFASTA
extractSequence
(const std::string &querySequence) const
BayesicSpace::ParseFASTA
extractWindow
(const size_t &windowStartPosition, const size_t &windowSize) const
BayesicSpace::ParseFASTA
extractWindowSorted
(const size_t &windowStartPosition, const size_t &windowSize) const
BayesicSpace::ParseFASTA
imputeMissing
()
BayesicSpace::ParseFASTA
operator=
(const ParseFASTA &toCopy)
BayesicSpace::ParseFASTA
operator=
(ParseFASTA &&toMove) noexcept
BayesicSpace::ParseFASTA
ParseFASTA
()=default
BayesicSpace::ParseFASTA
ParseFASTA
(const std::string &fastaFileName)
BayesicSpace::ParseFASTA
ParseFASTA
(const ParseFASTA &toCopy)
BayesicSpace::ParseFASTA
ParseFASTA
(ParseFASTA &&toMove) noexcept
BayesicSpace::ParseFASTA
sequenceNumber
() const noexcept
BayesicSpace::ParseFASTA
inline
~ParseFASTA
()=default
BayesicSpace::ParseFASTA
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