populations.hpp

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/*
 * Copyright (c) 2017 Anthony J. Greenberg
 *
 * Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
 *
 * 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
 *
 * 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
 *
 * 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
 *
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
 * THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS
 * BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER
 * IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
 * THE POSSIBILITY OF SUCH DAMAGE.
 */
 
 
#ifndef populations_hpp
#define populations_hpp
 
#include <vector>
#include <string>
 
using std::vector;
using std::string;
 
namespace sampFiles {
    class PopIndex {
        
    private:
        vector< vector<size_t> > _popInd;
        size_t _N;
        
    public:
        PopIndex() {};
        PopIndex(const int *arr, const size_t &N);
        PopIndex(const string &inFileName);
        
        ~PopIndex(){};
        
        vector<size_t> & operator[] (const size_t &i) { return _popInd[i]; };
        const vector<size_t> & operator[] (const size_t &i) const { return _popInd[i]; };
        
        size_t popSize(const size_t &i) {return _popInd[i].size(); };
        size_t popSize(const size_t &i) const {return _popInd[i].size(); };
        
        size_t size() {return _N; };
        size_t size() const {return _N; };
        
        size_t popNumber() {return _popInd.size(); };
        size_t popNumber() const {return _popInd.size(); };
        
    };
 
}
 
#endif /* populations_hpp */