| 
    Sample SNPs
    
   Fast ordered sampling of rows from large text or binary files. Special cases for DNA variant files (.bed, VCF, HapMap, etc). 
   | 
 
 
 
 
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   77         virtual volatile uint64_t 
ranInt() = 0;
 
  120         volatile uint64_t 
ranInt();
 
  130         static const unsigned short _n;
 
  132         static const unsigned short _m;
 
  134         static const uint64_t 
_um;
 
  136         static const uint64_t 
_lm;
 
  138         static const uint64_t 
_b;
 
  140         static const uint64_t 
_c;
 
  142         static const uint64_t 
_d;
 
  144         static const unsigned int _l;
 
  146         static const unsigned int _s;
 
  148         static const unsigned int _t;
 
  150         static const unsigned int _u;
 
  194         volatile uint64_t 
ranInt();
 
  248         volatile double runif() {
return 5.42101086242752217E-20*
static_cast<double>(_rng->
ranInt()); };
 
  264         volatile uint64_t 
vitterA(
const double &n, 
const double &N);
 
  275         volatile uint64_t 
vitter(
const double &n, 
const double &N);
 
  
Hardware random number generating class.
Definition: random.hpp:85
 
static const uint64_t _d
Tempering bitmask.
Definition: random.hpp:142
 
Pseudo-random number generator.
Definition: random.hpp:127
 
GenerateHR(GenerateHR &&old)
Move constructor.
Definition: random.hpp:102
 
virtual ~Generate()
Protected destructor.
Definition: random.hpp:72
 
volatile double runif()
Generate a uniform deviate.
Definition: random.hpp:248
 
volatile uint64_t vitter(const double &n, const double &N)
Sample from Vitter's distribution, method D.
Definition: random.cpp:218
 
static const unsigned int _l
Tempering shift.
Definition: random.hpp:144
 
volatile uint64_t ranInt()
Generate random integer.
Definition: random.hpp:242
 
GenerateMT()
Default constructor.
Definition: random.cpp:85
 
static const unsigned short _n
Degree of recurrence.
Definition: random.hpp:130
 
RanDraw(const RanDraw &old)=default
Copy constructor.
 
GenerateMT & operator=(const GenerateMT &old)=default
Copy assignment operator.
 
GenerateMT(const GenerateMT &old)=default
Copy constructor.
 
~GenerateMT()
Protected destructor.
Definition: random.hpp:167
 
static const uint64_t _c
Tempering bitmask.
Definition: random.hpp:140
 
volatile uint64_t vitterA(const double &n, const double &N)
Sample from Vitter's distribution, method A.
Definition: random.cpp:184
 
volatile uint64_t ranInt()
Generate a pseudo-random 64-bit unsigned integer.
Definition: random.cpp:104
 
~GenerateHR()
Destructor.
Definition: random.hpp:92
 
Generate & operator=(const Generate &old)=default
Protected copy assignment operator.
 
size_t _mti
State of the array index.
Definition: random.hpp:156
 
static const uint64_t _um
Most significant 33 bits.
Definition: random.hpp:134
 
Random number generating class.
Definition: random.hpp:202
 
virtual volatile uint64_t ranInt()=0
Generate a (pseudo-)random 64-bit unsigned integer.
 
RanDraw(RanDraw &&old)=default
Move constructor.
 
GenerateHR(const GenerateHR &old)
Copy constructor.
Definition: random.hpp:97
 
static const uint64_t _lm
Least significant 31 bits.
Definition: random.hpp:136
 
volatile uint64_t ranInt()
Generate a random 64-bit unsigned integer.
Definition: random.cpp:42
 
static const uint64_t _b
Tempering bitmask.
Definition: random.hpp:138
 
RanDraw()
Default constructor.
Definition: random.cpp:134
 
GenerateHR & operator=(const GenerateHR &old)=default
Copy assignment operator.
 
RanDraw & operator=(const RanDraw &old)=default
Copy assignment.
 
GenerateMT(GenerateMT &&old)=default
Move constructor.
 
~RanDraw()
Destructor.
Definition: random.hpp:215
 
Generate()
Protected default constructor.
Definition: random.hpp:48
 
Abstract base random number class.
Definition: random.hpp:45
 
uint64_t _x
Current state.
Definition: random.hpp:158
 
volatile double runifnz()
Generate a non-zero uniform deviate.
Definition: random.cpp:175
 
static const unsigned int _u
Tempering shift.
Definition: random.hpp:150
 
static const unsigned int _t
Tempering shift.
Definition: random.hpp:148
 
static const uint64_t _alt[2]
Array of alternative values for the twist.
Definition: random.hpp:152
 
GenerateHR()
Default constructor.
Definition: random.hpp:90
 
static const unsigned int _s
Tempering shift.
Definition: random.hpp:146
 
static const unsigned short _m
Middle word.
Definition: random.hpp:132
 
Generate(const Generate &old)
Protected copy constructor.
Definition: random.hpp:53
 
Generate(Generate &&old)
Protected move constructor.
Definition: random.hpp:58
 
uint64_t _mt[312]
Generator state array.
Definition: random.hpp:154