BED file output class. More...
#include <varfiles.hpp>
Inheritance diagram for sampFiles::BedFileO:
Collaboration diagram for sampFiles::BedFileO:
Public Member Functions | |
| BedFileO () | |
| Default constructor. | |
| BedFileO (const string &stubName) | |
| File name constructor. More... | |
| BedFileO (const BedFileO &in)=default | |
| Copy constructor. | |
| BedFileO & | operator= (const BedFileO &in)=default |
| Copy assignment. | |
| BedFileO (BedFileO &&in)=default | |
| Move constructor. | |
| BedFileO & | operator= (BedFileO &&in)=default |
| Move assignment. | |
| ~BedFileO () | |
| Destructor. | |
| void | open () |
| Open stream to write. | |
 Public Member Functions inherited from sampFiles::BedFile | |
| BedFile () | |
| Default constructor. | |
| BedFile (const string &stubName) | |
| File name constructor. More... | |
| BedFile (const BedFile &in)=default | |
| Copy constructor. | |
| BedFile & | operator= (const BedFile &in)=default |
| Copy assignment. | |
| BedFile (BedFile &&in)=default | |
| Move constructor. | |
| BedFile & | operator= (BedFile &&in)=default |
| Move assignment. | |
| ~BedFile () | |
| Destructor. | |
| void | close () |
| Close stream. | |
| Public Member Functions inherited from sampFiles::GbinFile | |
| GbinFile () | |
| Default constructor. | |
| GbinFile (const string &fileName, const size_t &nCols, const size_t &elemSize) | |
| Constructor with file name. More... | |
| GbinFile (const GbinFile &in)=default | |
| Copy constructor. | |
| GbinFile & | operator= (const GbinFile &in)=default |
| Copy assignment. | |
| GbinFile (GbinFile &&in)=default | |
| Move constructor. | |
| GbinFile & | operator= (GbinFile &&in)=default |
| Move assignment. | |
| ~GbinFile () | |
| Destructor. | |
| Public Member Functions inherited from sampFiles::VarFile | |
| VarFile (const VarFile &in)=default | |
| Copy constructor. | |
| VarFile & | operator= (const VarFile &in)=default |
| Copy assignment. | |
| VarFile (VarFile &&in)=default | |
| Move constructor. | |
| VarFile & | operator= (VarFile &&in)=default |
| Move assignment. | |
| ~VarFile () | |
| Destructor. | |
Friends | |
| class | BedFileI |
Additional Inherited Members | |
| Protected Member Functions inherited from sampFiles::VarFile | |
| VarFile () | |
| Default constructor (protected) | |
| Protected Attributes inherited from sampFiles::BedFile | |
| fstream | _famFile |
| Corresponding .fam file stream. | |
| fstream | _bimFile |
| Corresponding .bim file stream. | |
| string | _fileStub |
| File name stub (minus the extension) | |
| Protected Attributes inherited from sampFiles::GbinFile | |
| string | _fileName |
| File name. | |
| size_t | _nCols |
| Number of elements in a row. | |
| size_t | _elemSize |
| Size of each element in bytes. | |
| Protected Attributes inherited from sampFiles::VarFile | |
| fstream | _varFile |
| Variant file stream. | |
| Static Protected Attributes inherited from sampFiles::BedFile | |
| static const vector< char > | _masks = {static_cast<char>(0x03), static_cast<char>(0x0C), static_cast<char>(0x30), static_cast<char>(0xC0)} |
| Genotype bit masks. More... | |
| static const unordered_map< char, string > | _tests |
| Genotype bit tests. More... | |
Detailed Description
BED file output class.
Writes to BED files and the auxiliary files that come with them (.fam and .bim) as necessary. Data are written in the SNP-major format.
Constructor & Destructor Documentation
◆ BedFileO()
|
inline |
File name constructor.
- Parameters
-
[in] stubName file name minus the extension
The documentation for this class was generated from the following files:
