| 
    Sample SNPs
    
   Fast ordered sampling of rows from large text or binary files. Special cases for DNA variant files (.bed, VCF, HapMap, etc). 
   | 
 
Generic binary file output class. More...
#include <varfiles.hpp>
Public Member Functions | |
| GbinFileO () | |
| Default constructor.  | |
| GbinFileO (const string &fileName, const size_t &nCols, const size_t &elemSize) | |
| File name constructor.  More... | |
| GbinFileO (const GbinFileO &in)=default | |
| Copy constructor.  | |
| GbinFileO & | operator= (const GbinFileO &in)=default | 
| Copy assignment.  | |
| GbinFileO (GbinFileO &&in)=default | |
| Move constructor.  | |
| GbinFileO & | operator= (GbinFileO &&in)=default | 
| Move assignment.  | |
| ~GbinFileO () | |
| Destructor.  | |
| void | open () | 
| Open stream to write.  | |
  Public Member Functions inherited from sampFiles::GbinFile | |
| GbinFile () | |
| Default constructor.  | |
| GbinFile (const string &fileName, const size_t &nCols, const size_t &elemSize) | |
| Constructor with file name.  More... | |
| GbinFile (const GbinFile &in)=default | |
| Copy constructor.  | |
| GbinFile & | operator= (const GbinFile &in)=default | 
| Copy assignment.  | |
| GbinFile (GbinFile &&in)=default | |
| Move constructor.  | |
| GbinFile & | operator= (GbinFile &&in)=default | 
| Move assignment.  | |
| ~GbinFile () | |
| Destructor.  | |
| virtual void | close () | 
| Close stream.  | |
  Public Member Functions inherited from sampFiles::VarFile | |
| VarFile (const VarFile &in)=default | |
| Copy constructor.  | |
| VarFile & | operator= (const VarFile &in)=default | 
| Copy assignment.  | |
| VarFile (VarFile &&in)=default | |
| Move constructor.  | |
| VarFile & | operator= (VarFile &&in)=default | 
| Move assignment.  | |
| ~VarFile () | |
| Destructor.  | |
Friends | |
| class | GbinFileI | 
Additional Inherited Members | |
  Protected Member Functions inherited from sampFiles::VarFile | |
| VarFile () | |
| Default constructor (protected)  | |
  Protected Attributes inherited from sampFiles::GbinFile | |
| string | _fileName | 
| File name.  | |
| size_t | _nCols | 
| Number of elements in a row.  | |
| size_t | _elemSize | 
| Size of each element in bytes.  | |
  Protected Attributes inherited from sampFiles::VarFile | |
| fstream | _varFile | 
| Variant file stream.  | |
Generic binary file output class.
Writes binary files.
      
  | 
  inline | 
File name constructor.
| [in] | fileName | file name including extension | 
| [in] | nCols | number of columns, or elements in a row | 
| [in] | elemSize | size of each element in bytes |